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Sample GSM5968507 Query DataSets for GSM5968507
Status Public on Mar 01, 2023
Title Naïve 4
Sample type RNA
 
Source name splenic CD11b+ myeloid cells
Organism Mus musculus
Characteristics treatment: Naïve
cell type: splenic CD11b+ myeloid cells
Growth protocol Groups of wild type C57BL/6 mice were either untreated (naive, group D) or were injected i.p. with 20e6 allogeneic T cell depleted BALB/c splenocytes alone (group FN) with CTLA4-Ig (150µg i.p. once on day 2, Abatacept, Bristol-Myers Squibb, New York, NY, group DC), or CTLA4Ig plus recombinant EPO (5000 units/kg i.p. daily, epoetin alfa, Amgen, Thousand Oaks, CA, group DCE). On day 7, splenic CD11b+ myeloid cells were isolated by positive selection (kit #18970, STEMCELL, Vancouver, BC, Canada).
Extracted molecule total RNA
Extraction protocol RNA was isolated using TRIzol (Thermo Fisher Scientific, Waltham, MA) and cleaned using RNeasy Mini Kit (Qiagen, Hilden, Germany).
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description FN4
Data processing Gene expression profiling was then performed using the nCounter® Myeloid Innate Immunity Panel (NanoString Technologies, Seattle, WA). The normalized data were log2 transformed.
 
Submission date Mar 23, 2022
Last update date Mar 03, 2023
Contact name Weijia Zhang
E-mail(s) weijia.zhang@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Renal
Lab Bioinfomatics
Street address 1 Gustave L. Levy Pl
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platform ID GPL25266
Series (1)
GSE199270 Linking erythropoietin to regulatory T-cell-dependent allograft survival through myeloid cells

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
Il4 4.35891954
Cx3cr1 9.142026916
Ear3 10.23502715
Ccl28 1.452028944
Nfatc2 7.406225255
Ccr7 9.884570845
Ccl22 5.095885134
Tnfaip3 12.39307655
Ptprb 2.773957039
Ccl21a 3.036991445
Trim9 4.452028944
Olr1 5.911460563
Ets1 10.85717041
Serpine1 4.259383866
Stat5a 8.186738564
Flrt2 4.152468662
Hip1r 7.869881459
Ndufa7 8.791878947
Ctla4 6.89497244
Mob3c 6.94388204

Total number of rows: 734

Table truncated, full table size 12 Kbytes.




Supplementary file Size Download File type/resource
GSM5968507_20190712_Jul12-2_FN4_02.RCC.gz 8.5 Kb (ftp)(http) RCC
Processed data included within Sample table

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