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Sample GSM63685

Query DataSets for GSM63685

Status

Public on Dec 21, 2005

Title

NG002_c

Sample type

RNA

Source name

nodose ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MUR_b2_at	209.9350282	P	0.002307
AFFX-MURINE_b1_at	354.8401921	P	0.000829
AFFX-MURINE_B2_at	5514.7384872	P	0.000030
AFFX-b-ActinMur/M12481_5_at	73.1607141	P	0.028457
AFFX-b-ActinMur/M12481_M_at	438.8522862	P	0.000044
AFFX-b-ActinMur/M12481_3_at	3365.2717980	P	0.000044
AFFX-GapdhMur/M32599_5_at	47.3825917	P	0.006187
AFFX-GapdhMur/M32599_M_at	688.3365356	P	0.000052
AFFX-GapdhMur/M32599_3_at	4531.1039010	P	0.000044
AFFX-TransRecMur/X57349_5_at	7.7758846	A	0.455413
AFFX-TransRecMur/X57349_M_at	2.3167101	A	0.904333
AFFX-TransRecMur/X57349_3_at	24.3745448	P	0.021902
AFFX-PyruCarbMur/L09192_5_at	36.7485280	A	0.116113
AFFX-PyruCarbMur/L09192_MA_at	58.2141993	M	0.042962
AFFX-PyruCarbMur/L09192_MB_at	4.3647267	A	0.843268
AFFX-PyruCarbMur/L09192_3_at	297.3560137	P	0.000169
AFFX-18SRNAMur/X00686_5_at	269.6154814	P	0.000044
AFFX-18SRNAMur/X00686_M_at	721.4484752	P	0.000044
AFFX-18SRNAMur/X00686_3_at	281.7516544	P	0.000195
AFFX-DapX-5_at	11.6528010	M	0.046482

Total number of rows: 45101

Table truncated, full table size 1473 Kbytes.

Supplementary data files not provided

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