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Sample GSM63848 Query DataSets for GSM63848
Status Public on Dec 10, 2017
Title Regenerating_MOON265
Sample type RNA
 
Source name Laser captured spinal cord neurons
Organism Rattus norvegicus
Characteristics Adult female Fischer 344
Biomaterial provider Lawrence Moon
Treatment protocol Cut 10um transverse cryosections of unfixed spinal cord, dehydrate, laser capture
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol PicoPure (version C), Arcturus
Label Biotin
Label protocol Three round Eberwine amplification, proprietary modified Message Amp using BioArray High Yield labeling kit (Enzo) in last round.
 
Hybridization protocol Standard Affymetrix procedure for fragmentation and hybridization
Scan protocol Standard GCOS scanning, GeneChip Scanner 3000
Description Identification of genes associated with axotomy or regeneration in the CNS.
Data processing GCOS, scaled to 200
 
Submission date Jul 12, 2005
Last update date Dec 10, 2017
Contact name Lawrence DF Moon
E-mail(s) lawrence.moon@kcl.ac.uk
Organization name King's College London
Department Wolfson Centre for Age-Related Diseases
Lab Moon team
Street address 16 - 18 Newcomen Street
City London
ZIP/Postal code SE11UL
Country United Kingdom
 
Platform ID GPL1355
Series (1)
GSE2925 Identification of genes expressed by spinal cord neurons after axotomy and during axon regeneration

Data table header descriptions
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 118 P 0.000258
AFFX-BioB-M_at 279.2 P 0.000044
AFFX-BioB-3_at 257.3 P 0.000127
AFFX-BioC-5_at 664.9 P 0.000044
AFFX-BioC-3_at 566.4 P 0.000044
AFFX-BioDn-5_at 1159.8 P 0.000044
AFFX-BioDn-3_at 2925.6 P 0.000044
AFFX-CreX-5_at 4774 P 0.000052
AFFX-CreX-3_at 4832.8 P 0.000044
AFFX-DapX-5_at 337.6 P 0.00007
AFFX-DapX-M_at 645.7 P 0.000052
AFFX-DapX-3_at 785.1 P 0.00006
AFFX-LysX-5_at 371.8 P 0.000052
AFFX-LysX-M_at 602.3 P 0.000044
AFFX-LysX-3_at 635.7 P 0.000044
AFFX-PheX-5_at 721.5 P 0.000754
AFFX-PheX-M_at 737.1 P 0.000044
AFFX-PheX-3_at 837.3 P 0.000044
AFFX-ThrX-5_at 664.2 P 0.000044
AFFX-ThrX-M_at 716.3 P 0.000052

Total number of rows: 31099

Table truncated, full table size 815 Kbytes.




Supplementary file Size Download File type/resource
GSM63848.CEL.gz 4.5 Mb (ftp)(http) CEL

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