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Sample GSM640447 Query DataSets for GSM640447
Status Public on Jan 19, 2012
Title CH22726_control_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.6015137297604 96.09838227 3.860642 0.5051948 29
ILMN_2055271 6.82190611339464 112.1612539 3.212676 0.04935065 17
ILMN_1736007 6.65025864701111 99.56738559 4.389014 0.3792208 20
ILMN_2383229 6.50717375901346 89.74837685 4.270592 0.7597402 16
ILMN_1806310 6.64367063831597 99.0880197 4.039455 0.3714286 18
ILMN_1779670 6.54156092359443 92.03460752 4.547583 0.7688312 18
ILMN_1653355 6.81429780923378 111.6291901 7.9132 0.05974026 17
ILMN_1717783 6.4432077901186 85.66457349 2.986611 0.9441559 22
ILMN_1705025 6.54875061375479 92.51402772 2.646344 0.6961039 27
ILMN_1814316 6.69091313362697 102.5474573 5.294274 0.2064935 23
ILMN_2359168 6.60094347738543 96.05987433 4.106217 0.5272727 25
ILMN_1731507 6.58770060698977 95.14869705 6.729702 0.5844156 14
ILMN_1787689 6.6917442337151 102.6136505 3.680863 0.2038961 19
ILMN_3241953 7.243703003207 146.2827612 9.367493 0 21
ILMN_1745607 6.62396528003958 97.65287356 4.244167 0.4090909 16
ILMN_2136495 6.41882156383178 84.30798013 2.985204 0.9714286 26
ILMN_1668111 6.47602306571499 87.72636813 3.125007 0.8688312 20
ILMN_2295559 6.56918709173052 93.89999688 6.674754 0.5337662 10
ILMN_1735045 6.57290962324031 94.13737382 2.379678 0.574026 29
ILMN_1680754 6.70048933073816 103.2195865 6.555911 0.1298701 13

Total number of rows: 47231

Table truncated, full table size 2845 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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