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Sample GSM640450 Query DataSets for GSM640450
Status Public on Jan 19, 2012
Title CH26238_control_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.64148373796828 109.3763324 4.802181 0.4142857 22
ILMN_2055271 6.6704566767808 111.8805523 4.628197 0.2233766 23
ILMN_1736007 6.49808592230761 97.58118059 3.449896 0.887013 26
ILMN_2383229 6.60505135672596 106.2968111 5.763587 0.4363636 27
ILMN_1806310 6.69447163362545 113.8903785 6.920712 0.2337662 19
ILMN_1779670 6.53510562247991 100.4991485 4.323798 0.7935065 20
ILMN_1653355 6.8063916634449 123.6744428 6.473349 0.05324675 30
ILMN_1717783 6.47605045300669 95.85492016 5.989203 0.9194805 18
ILMN_1705025 6.59557949861147 105.5092032 5.811553 0.587013 12
ILMN_1814316 6.58095050601945 104.3057085 5.422298 0.561039 20
ILMN_2359168 6.60223963437536 106.0851515 6.164754 0.5324675 23
ILMN_1731507 6.42276272039025 91.78848013 4.315458 0.9714286 21
ILMN_1787689 6.74251658447125 118.1414398 8.105376 0.1285714 20
ILMN_3241953 7.09397352909777 150.8687398 7.698312 0.002597403 17
ILMN_1745607 6.61850593047735 107.3789464 4.21446 0.4415585 30
ILMN_2136495 6.58182487703608 104.3661884 8.175146 0.625974 16
ILMN_1668111 6.6995866223395 114.3384857 6.228391 0.225974 23
ILMN_2295559 6.74017552411071 117.9425189 9.046283 0.1402597 13
ILMN_1735045 6.57465949042565 103.7809556 4.387717 0.5805195 22
ILMN_1680754 7.15009504746324 157.0743575 13.96411 0.002597403 13

Total number of rows: 47231

Table truncated, full table size 2842 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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