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Sample GSM640452 Query DataSets for GSM640452
Status Public on Jan 19, 2012
Title CH00122_control_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.63104258545661 106.355953 4.458149 0.3584416 19
ILMN_2055271 6.64142726094783 107.1185686 3.928718 0.4909091 20
ILMN_1736007 6.50413905876384 97.90047202 4.359657 0.8077922 13
ILMN_2383229 6.60207277329049 104.3868196 2.875602 0.5701299 23
ILMN_1806310 6.71997815939224 113.014604 6.808829 0.1506494 19
ILMN_1779670 6.49084015724573 96.97981577 3.473218 0.8454546 23
ILMN_1653355 6.63853925895192 106.8759813 5.435703 0.4532467 15
ILMN_1717783 6.47488267286289 95.98871015 2.935651 0.8844156 25
ILMN_1705025 6.58153291331058 102.949475 2.915374 0.5441558 19
ILMN_1814316 6.51129750109954 98.35487456 4.133136 0.8233766 15
ILMN_2359168 6.57325331736747 102.3873188 4.43098 0.5623376 23
ILMN_1731507 6.5841991270942 103.1448762 4.338096 0.5311688 20
ILMN_1787689 6.68298636415776 110.1762624 6.995277 0.2792208 14
ILMN_3241953 7.1812706061891 162.7321211 7.9052 0 16
ILMN_1745607 6.65210039756933 107.9165118 4.288039 0.3337662 21
ILMN_2136495 6.59438465626516 103.8379063 5.038351 0.4428571 22
ILMN_1668111 6.69404470290708 110.9970314 10.75627 0.1935065 7
ILMN_2295559 6.58442057484096 103.1659429 3.898831 0.6077922 17
ILMN_1735045 6.63026259592206 106.3059343 4.599064 0.425974 26
ILMN_1680754 7.01927494762133 143.1483465 9.672464 0 12

Total number of rows: 47231

Table truncated, full table size 2824 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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