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GEO accession:
Sample GSM646522
Query DataSets for GSM646522
Status
Public on Dec 28, 2010
Title
Gingeras_GM12878_cell_total
Sample type
SRA
Source name
GM12878
Organism
Homo sapiens
Characteristics
cell: GM12878
cell organism: Human
cell description: lymphoblastoid
cell karyotype: relatively normal
cell lineage: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
localization: cell
rnaextract: total
Biomaterial provider
Coriell Cell Repositories
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/GM12878_protocol.pdf
Extracted molecule
total RNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlLongRnaSeq
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Illumina Genome Analyzer
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlLongRnaSeq
Submission date
Dec 28, 2010
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (2)
GSE26284
ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE32931
ENCODE Cold Spring Harbor Labs Long RNA-seq (hg18)
Relations
SRA
SRX036891
BioSample
SAMN00189303
Supplementary file
Size
Download
File type/resource
GSM646522_hg18_wgEncodeCshlLongRnaSeqAlignmentsRep1Gm12878CellTotal.bb
399.1 Mb
(ftp)
(http)
BB
GSM646522_hg18_wgEncodeCshlLongRnaSeqAlignmentsRep2Gm12878CellTotal.bb
309.7 Mb
(ftp)
(http)
BB
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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