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Sample GSM646524

Query DataSets for GSM646524

Status

Public on Dec 28, 2010

Title

Gingeras_K562_cytosol_longPolyA

Sample type

SRA

Source name

K562

Organism

Homo sapiens

Characteristics

cell: K562
cell organism: Human
cell description: leukemia
cell karyotype: cancer
cell lineage: "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell sex: F
localization: cytosol
rnaextract: longPolyA

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/K562_protocol.pdf

Extracted molecule

polyA RNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlLongRnaSeq

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina Genome Analyzer

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlLongRnaSeq

Submission date

Dec 28, 2010

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9052

Series (2)

GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE32931	ENCODE Cold Spring Harbor Labs Long RNA-seq (hg18)

Relations

SRA

SRX036893

BioSample

SAMN00189305

Supplementary file	Size	Download	File type/resource
GSM646524_hg18_wgEncodeCshlLongRnaSeqAlignmentsRep1K562CytosolLongpolyaV2.bb	433.9 Mb	(ftp)(http)	BB
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file