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GEO accession:
Sample GSM646559
Query DataSets for GSM646559
Status
Public on Dec 29, 2010
Title
Stam_HepG2
Sample type
SRA
Source name
HepG2
Organism
Homo sapiens
Characteristics
cell: HepG2
cell organism: Human
cell description: liver carcinoma
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
Biomaterial provider
ATCC
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/HepG2_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer II
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Submission date
Dec 28, 2010
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE26328
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA
SRX037108
BioSample
SAMN00189400
Named Annotation
GSM646559_hg19_wgEncodeUwDgfHepg2Raw.bigWig
Named Annotation
GSM646559_hg19_wgEncodeUwDgfHepg2Sig.bigWig
Supplementary file
Size
Download
File type/resource
GSM646559_hg19_wgEncodeUwDgfHepg2Aln.bam
5.2 Gb
(ftp)
(http)
BAM
GSM646559_hg19_wgEncodeUwDgfHepg2Hotspots.broadPeak.txt.gz
2.8 Mb
(ftp)
(http)
TXT
GSM646559_hg19_wgEncodeUwDgfHepg2Pk.narrowPeak.txt.gz
1.7 Mb
(ftp)
(http)
TXT
GSM646559_hg19_wgEncodeUwDgfHepg2Raw.bigWig
294.1 Mb
(ftp)
(http)
BIGWIG
GSM646559_hg19_wgEncodeUwDgfHepg2Sig.bigWig
328.4 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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