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GEO accession:
Sample GSM646561
Query DataSets for GSM646561
Status
Public on Dec 29, 2010
Title
UW_DnaseDgf_HMF
Sample type
SRA
Source name
HMF
Organism
Homo sapiens
Characteristics
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HMF
cell organism: human
cell description: mammary fibroblasts
cell sex: F
labversion: lmax-v1.0
Biomaterial provider
ScienCell
Growth protocol
HMF_Stam_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Submission date
Dec 28, 2010
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE26328
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA
SRX037110
BioSample
SAMN00189402
Named Annotation
GSM646561_hg19_wgEncodeUwDgfHmfRaw.bigWig
Named Annotation
GSM646561_hg19_wgEncodeUwDgfHmfSig.bigWig
Supplementary file
Size
Download
File type/resource
GSM646561_hg19_wgEncodeUwDgfHmfAln.bam
8.0 Gb
(ftp)
(http)
BAM
GSM646561_hg19_wgEncodeUwDgfHmfHotspots.broadPeak.txt.gz
3.7 Mb
(ftp)
(http)
TXT
GSM646561_hg19_wgEncodeUwDgfHmfPk.narrowPeak.txt.gz
2.7 Mb
(ftp)
(http)
TXT
GSM646561_hg19_wgEncodeUwDgfHmfPkV2.narrowPeak.gz
2.9 Mb
(ftp)
(http)
NARROWPEAK
GSM646561_hg19_wgEncodeUwDgfHmfRaw.bigWig
328.5 Mb
(ftp)
(http)
BIGWIG
GSM646561_hg19_wgEncodeUwDgfHmfSig.bigWig
452.5 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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