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Sample GSM646566 Query DataSets for GSM646566
Status Public on Dec 29, 2010
Title Stam_SK-N-SH_RA
Sample type SRA
 
Source name SK-N-SH_RA
Organism Homo sapiens
Characteristics cell: SK-N-SH_RA
cell organism: Human
cell description: neuroblastoma cell line differentiated w/ retinoic acid
cell karyotype: cancer
cell lineage: "SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines." - ATCC
cell sex: F
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA SRX037115
BioSample SAMN00189407
Named Annotation GSM646566_hg19_wgEncodeUwDgfSknshraRaw.bigWig
Named Annotation GSM646566_hg19_wgEncodeUwDgfSknshraSig.bigWig

Supplementary file Size Download File type/resource
GSM646566_hg19_wgEncodeUwDgfSknshraAln.bam 5.2 Gb (ftp)(http) BAM
GSM646566_hg19_wgEncodeUwDgfSknshraHotspots.broadPeak.txt.gz 2.2 Mb (ftp)(http) TXT
GSM646566_hg19_wgEncodeUwDgfSknshraPk.narrowPeak.txt.gz 1.7 Mb (ftp)(http) TXT
GSM646566_hg19_wgEncodeUwDgfSknshraRaw.bigWig 277.6 Mb (ftp)(http) BIGWIG
GSM646566_hg19_wgEncodeUwDgfSknshraSig.bigWig 297.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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