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Sample GSM646567 Query DataSets for GSM646567
Status Public on Dec 29, 2010
Title Stam_K562
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics cell: K562
cell organism: Human
cell description: leukemia
cell karyotype: cancer
cell lineage: "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell sex: F
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
Relations
SRA SRX037116
BioSample SAMN00189408
Named Annotation GSM646567_hg19_wgEncodeUwDgfK562Raw.bigWig
Named Annotation GSM646567_hg19_wgEncodeUwDgfK562Sig.bigWig

Supplementary file Size Download File type/resource
GSM646567_hg19_wgEncodeUwDgfK562Aln.bam 5.2 Gb (ftp)(http) BAM
GSM646567_hg19_wgEncodeUwDgfK562Hotspots.broadPeak.txt.gz 3.6 Mb (ftp)(http) TXT
GSM646567_hg19_wgEncodeUwDgfK562Pk.narrowPeak.txt.gz 2.2 Mb (ftp)(http) TXT
GSM646567_hg19_wgEncodeUwDgfK562Raw.bigWig 286.0 Mb (ftp)(http) BIGWIG
GSM646567_hg19_wgEncodeUwDgfK562Sig.bigWig 327.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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