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GEO accession:
Sample GSM646568
Query DataSets for GSM646568
Status
Public on Dec 29, 2010
Title
Stam_GM06990
Sample type
SRA
Source name
GM06990
Organism
Homo sapiens
Characteristics
cell: GM06990
cell organism: Human
cell description: lymphoblastoid (CEPH)
cell karyotype: relatively normal
cell lineage: CEPH/Utah - European Caucasion; Epstein-Barr Virus
cell sex: F
Biomaterial provider
Coriell
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer II
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Submission date
Dec 28, 2010
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE26328
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA
SRX037117
BioSample
SAMN00189409
Named Annotation
GSM646568_hg19_wgEncodeUwDgfGm06990Raw.bigWig
Named Annotation
GSM646568_hg19_wgEncodeUwDgfGm06990Sig.bigWig
Supplementary file
Size
Download
File type/resource
GSM646568_hg19_wgEncodeUwDgfGm06990Aln.bam
4.4 Gb
(ftp)
(http)
BAM
GSM646568_hg19_wgEncodeUwDgfGm06990Hotspots.broadPeak.txt.gz
2.7 Mb
(ftp)
(http)
TXT
GSM646568_hg19_wgEncodeUwDgfGm06990Pk.narrowPeak.txt.gz
1.7 Mb
(ftp)
(http)
TXT
GSM646568_hg19_wgEncodeUwDgfGm06990Raw.bigWig
263.8 Mb
(ftp)
(http)
BIGWIG
GSM646568_hg19_wgEncodeUwDgfGm06990Sig.bigWig
285.2 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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