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Sample GSM646569 Query DataSets for GSM646569
Status Public on Dec 29, 2010
Title UW_DnaseDgf_Th1
Sample type SRA
 
Source name Th1
Organism Homo sapiens
Characteristics cell: Th1
cell organism: Human
cell description: primary human Th1 T cells
cell sex: U
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Submission date Dec 28, 2010
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA SRX037118
BioSample SAMN00189410
Named Annotation GSM646569_hg19_wgEncodeUwDgfTh1Raw.bigWig
Named Annotation GSM646569_hg19_wgEncodeUwDgfTh1RawRep2.bigWig
Named Annotation GSM646569_hg19_wgEncodeUwDgfTh1Sig.bigWig
Named Annotation GSM646569_hg19_wgEncodeUwDgfTh1SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM646569_hg19_wgEncodeUwDgfTh1Aln.bam 5.5 Gb (ftp)(http) BAM
GSM646569_hg19_wgEncodeUwDgfTh1Hotspots.broadPeak.txt.gz 2.2 Mb (ftp)(http) TXT
GSM646569_hg19_wgEncodeUwDgfTh1HotspotsRep2.broadPeak.gz 4.6 Mb (ftp)(http) BROADPEAK
GSM646569_hg19_wgEncodeUwDgfTh1Pk.narrowPeak.txt.gz 1.5 Mb (ftp)(http) TXT
GSM646569_hg19_wgEncodeUwDgfTh1PkRep2.narrowPeak.gz 2.2 Mb (ftp)(http) NARROWPEAK
GSM646569_hg19_wgEncodeUwDgfTh1Raw.bigWig 281.8 Mb (ftp)(http) BIGWIG
GSM646569_hg19_wgEncodeUwDgfTh1RawRep2.bigWig 393.2 Mb (ftp)(http) BIGWIG
GSM646569_hg19_wgEncodeUwDgfTh1Sig.bigWig 326.2 Mb (ftp)(http) BIGWIG
GSM646569_hg19_wgEncodeUwDgfTh1SigRep2.bigWig 835.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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