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Sample GSM66698 Query DataSets for GSM66698
Status Public on Jul 30, 2005
Title Human HL-60 cells
Sample type SAGE
Anchor NlaIII
Tag Count 52162
Tag Length 10
 
Source name HL-60 cells
Organism Homo sapiens
Characteristics Human HL-60 cells, used as normal control in studying the effects of 2.45GHz radiofrequency on gene expression.
Treatment protocol Sham treatment of 2.45GHz exposure for 2 hours
Extracted molecule polyA RNA
 
Description The biological effect of radiofrequency (RF) fields remains controversial. We address this issue by examining whether RF fields can cause changes in gene expression. We used the pulsed RF fields at a frequency of 2.45 GHz that is commonly used in telecommunication to expose cultured human HL-60 cells. We used the SAGE (serial analysis of gene expression) method to measure the RF effect on gene expression at the genome level. We observed that 221 genes altered their expression after a 2-hour exposure. The number of affected genes increased to 759 after a 6-hour exposure. Functional classification of the affected genes reveals that apoptosis-related genes were among the up-regulated ones and the cell cycle genes among the down-regulated ones. We observed no significant increase in the expression of heat shock genes. These results indicate that the RF fields at 2.45 GHz can alter gene expression in cultured human cells through non-thermal mechanism.

FEBS LETTERS, 2005 (in press)
 
Submission date Jul 28, 2005
Last update date Nov 19, 2008
Contact name San Ming Wang
E-mail(s) swang1@northwestern.edu
Phone 224-364-7491
Fax 224-364-5003
Organization name ENH Research Institute, Northwestern University
Department Center for Functional Genomics
Street address 1001 University Place
City Evanston
State/province IL
ZIP/Postal code 60062
Country USA
 
Platform ID GPL4
Series (1)
GSE3025 2.45 GHz Radiofrequency fields alter gene expression in cultured human cells

Data table header descriptions
TAG
COUNT Absolute tag count
TPM tags per million

Data table
TAG COUNT TPM
CCCATCGTCC 1112 21318.20
GGATTTGGCC 727 13937.35
AAGACAGTGG 519 9949.77
GAGGGAGTTT 514 9853.92
GCTCCCCTTT 485 9297.96
TGCACGTTTT 469 8991.22
CCACTGCACT 464 8895.36
GTGAAACCCC 426 8166.86
TTGGTCCTCT 403 7725.93
AGCTCTCCCT 383 7342.51
CCCCAGCCAG 343 6575.67
CCTGTAATCC 334 6403.13
CGCTGGTTCC 334 6403.13
AGGAAAGCTG 313 6000.54
GTGAAGGCAG 294 5636.29
ATGGCTGGTA 293 5617.12
CCCTGGGTTC 284 5444.58
AGGCTACGGA 277 5310.38
AAGCGGCCGC 268 5137.84
CACCTAATTG 261 5003.64

Total number of rows: 17297

Table truncated, full table size 322 Kbytes.




Supplementary data files not provided

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