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Sample GSM672835 Query DataSets for GSM672835
Status Public on Feb 14, 2011
Title Gingeras_K562_cytosol_longPolyA_2 (superseded by GSE94234)
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics cell: K562
cell organism: Human
cell description: leukemia
cell karyotype: cancer
cell lineage: "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell sex: F
localization: cytosol
rnaextract: longPolyA
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/K562_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB SOLiD System 3.0
 
Description ****************************
GSM672835 record metadata submitted on Feb 10 2011 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE94234
****************************
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaSeq
 
Submission date Feb 10, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9442
Series (1)
GSE27221 ENCODE Genome Institute of Singapore RNA-Seq
Relations
Superseded by GSE94234
SRA SRX042348
BioSample SAMN00211036
Named Annotation GSM672835_hg19_wgEncodeGisRnaSeqK562CytosolPapMinusRawRep2.bigWig
Named Annotation GSM672835_hg19_wgEncodeGisRnaSeqK562CytosolPapPlusRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM672835_hg19_wgEncodeGisRnaSeqK562CytosolPapAlnRep2.bam 828.6 Mb (ftp)(http) BAM
GSM672835_hg19_wgEncodeGisRnaSeqK562CytosolPapMinusRawRep2.bigWig 76.9 Mb (ftp)(http) BIGWIG
GSM672835_hg19_wgEncodeGisRnaSeqK562CytosolPapPlusRawRep2.bigWig 84.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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