|
| Status |
Public on Oct 12, 2023 |
| Title |
3057_16 |
| Sample type |
genomic |
| |
|
| Source name |
peripheral white blood cells
|
| Organism |
Homo sapiens |
| Characteristics |
gender: male
cell type: peripheral white blood cells
disease state: HNSqCC patient
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
After centrifugation, the plasma component of the blood was used for either immediate biochemistry analysis or for storage at -80o C for the subsequent measurements. Genomic DNA was then isolated from peripheral white blood cells using the phenol/chloroform DNA extraction method after lysis of red blood cells.
|
| Label |
Biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
Using the Axiom Genome-Wide Array Plate technology platform provided by Thermo Fisher Scientific Inc.
|
| Scan protocol |
Using the Axiom Genome-Wide Array Plate technology platform provided by Thermo Fisher Scientific Inc.
|
| Data processing |
Import the CEL files into Axiom Analysis Suite, using Best Practices Workflow from the recommendations of the Axiom Genotyping Solution-Data Analysis
Genotype Call (SNP call): AA, AB, BB, NoCall
|
| |
|
| Submission date |
Nov 17, 2022 |
| Last update date |
Oct 12, 2023 |
| Contact name |
Yun-Shien Lee |
| E-mail(s) |
bojack@mail.mcu.edu.tw
|
| Organization name |
Ming Chuan Univ
|
| Department |
Dept. Biotechnology
|
| Lab |
GMRCL
|
| Street address |
TauYau
|
| City |
TauYau |
| State/province |
Taiwan |
| ZIP/Postal code |
115 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL32738 |
| Series (1) |
| GSE218224 |
Alcohol dehydrogenase 1B emerged prominent in the carcinogenesis of oro- and hypopharyngeal cancers in Genome-Wide Study in areca-quid endemic area |
|
