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Sample GSM680023 Query DataSets for GSM680023
Status Public on Nov 01, 2012
Title IL-17A 2
Sample type RNA
 
Source name HaCaT
Organism Homo sapiens
Characteristics cell line: HaCaT
cell type: keratinocytes
Treatment protocol samples were exposed to cytokines at 200ng/ml for 12h
Growth protocol HaCaT cells were grown in DMEM medium (1.5mM Ca), supplemented with 10% FCS, p/s and glu
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Plus Mini Ki
Label biotin
Label protocol biotinylation of cRNA
 
Hybridization protocol HumanHT12 v.4 Expression BeadChip, 750ng of bitinylated cRNA used
Scan protocol Illumina iScan array scanner
Description replicate 2
101069-05
Data processing Illumina' Genomestudio v.2010.1 with default settings
 
Submission date Feb 25, 2011
Last update date Nov 01, 2012
Contact name Stephen Taylor
E-mail(s) stephen.taylor@imm.ox.ac.uk
Phone +44 1865 222640
Organization name CBRG
Street address Headington
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platform ID GPL10558
Series (1)
GSE27533 IL-17 downregulates filaggrin and affects epidermal barrier function gene expression; potential role in the pathogenesis of atopic eczema

Data table header descriptions
ID_REF
VALUE using the Bioconductor package 'lumi' lumiN and lumiT was used to normalize and transform the data

Data table
ID_REF VALUE
ILMN_1762337 7.426066528
ILMN_2055271 7.393396346
ILMN_1736007 7.383000378
ILMN_2383229 7.370982772
ILMN_1806310 7.38631932
ILMN_1779670 7.238417432
ILMN_1653355 7.242251179
ILMN_1717783 7.228911512
ILMN_1705025 7.421199461
ILMN_1814316 7.316333195
ILMN_2359168 7.194251791
ILMN_1731507 7.169608938
ILMN_1787689 7.296714992
ILMN_3241953 7.282025039
ILMN_1745607 7.173305999
ILMN_2136495 7.263990902
ILMN_1668111 7.36511135
ILMN_2295559 7.346172312
ILMN_1735045 7.314656282
ILMN_1680754 7.230133526

Total number of rows: 47230

Table truncated, full table size 1148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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