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GEO accession:
Sample GSM683787
Query DataSets for GSM683787
Status
Public on Mar 01, 2011
Title
Myers_MCF-7_1_None_Duke
Sample type
SRA
Source name
MCF-7
Organism
Homo sapiens
Characteristics
cell: MCF-7
cell organism: Human
cell description: mammary gland, adenocarcinoma
cell karyotype: cancer
cell sex: F
replicate: 1
treatment: None
obtainedby: Duke
Biomaterial provider
ATCC
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cells/human/Duke/UNC/UTA/EBI_Open_Chromatin:MCF-7_Crawford_protocol.pdf
Yale_TFBS(Farnham):MCF-7_Farnham_protocol.pdf UW_Stam:Stam_15_protocols.pdf
Extracted molecule
genomic DNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
Library strategy
Bisulfite-Seq
Library source
genomic
Library selection
Reduced Representation
Instrument model
Illumina Genome Analyzer IIx
Description
Reduced Representation
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
Submission date
Mar 01, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL10999
Series (1)
GSE27584
DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
Relations
SRA
SRX066287
BioSample
SAMN00621768
Supplementary file
Size
Download
File type/resource
GSM683787_hg19_wgEncodeHaibMethylRrbsMcf7DukeSitesRep1.bedRrbs.gz
14.9 Mb
(ftp)
(http)
BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA
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