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Sample GSM7039798 Query DataSets for GSM7039798
Status Public on Apr 12, 2023
Title Normal1
Sample type RNA
 
Source name Mammary gland, non-challenged
Organism Mus musculus
Characteristics tissue: mammary gland
treatment: control, non-challenged
Treatment protocol Mice were infected with E. coli, Strep. uberis or M. bovis bacteria by intramammary infusion. After 24 or 48 hours, mammary tissues were sampled for RNA extraction.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the GeneElute Mammalian Total RNA Miniprep Kit (Sigma-Aldrich, Rehovot, Israel) combined with on-Column DNase I Digestion Set (Sigma) and stored at -80C.
Label None
Label protocol Labeling was performed according to manufacturer's instructions.
 
Hybridization protocol Hybridization was performed according to manufacturer's instructions.
Scan protocol nCounter Sprint profiler was used for scanning and image acquisition.
Data processing Data was analyzed using nSolver™ analysis software version 4.0
 
Submission date Feb 12, 2023
Last update date Apr 12, 2023
Contact name Nahum Yehuda Shpigel
E-mail(s) nahum.shpigel@mail.huji.ac.il
Phone 0548820526
Organization name Hebrew University
Department Veterinary
Lab Shpigelab
Street address POB 12
City Rehovot
State/province Please Select…
ZIP/Postal code 76100
Country Israel
 
Platform ID GPL25266
Series (1)
GSE225127 Immune profiling of experimental murine mastitis

Data table header descriptions
ID_REF
VALUE nSolver™ computed normalized counts

Data table
ID_REF VALUE
2810417H13Rik 9.167690935
2900026A02Rik 1001.393933
Abcc8 10.57810492
Acad10 105.7810492
Acly 4138.859853
Acod1 4.936448965
Acot11 13.3989329
Acot3 10.57810492
Acox1 1476.703447
Adam19 30.32390078
Adam8 102.9602213
Adamts1 634.6862955
Adamts12 94.49773733
Adamts14 4.936448965
Adamts17 19.04058886
Adamts2 158.6715739
Adamts3 21.15620985
Adamts4 47.95407566
Adamts9 131.8737081
Adcyap1r1 16.21976088

Total number of rows: 734

Table truncated, full table size 12 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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