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GEO accession:
Sample GSM7256330
Query DataSets for GSM7256330
Status
Public on Apr 30, 2023
Title
Control ChIP-seq from heart (ENCLB335FXC)
Sample type
SRA
Source name
Mus musculus strain B6CASTF1/J female adult (2 months) heart tissue
Organism
Mus musculus
Characteristics
tissue_type: heart
biomaterial_type: tissue
biosample encode accession: ENCBS786IOZ (SAMN34251874)
note: Bernstein pool G of 2 heart biosamples
Sex: female
dev stage: adult
age: 2 month
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS786IOZ at ENCODE;
https://www.encodeproject.org/ENCBS786IOZ/
link: derived from ENCODE donor ENCDO509HIY;
https://www.encodeproject.org/ENCDO509HIY/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/bc380aee-992d-4c64-8508-587937f4ab35/@@download/attachment/Frozen%20Tissue%20for%20ChIP%20Module%202%20-%20Cross%20Linking%20Homogenized%20Sample%20v%201.2.pdf
general protocol:
https://www.encodeproject.org/documents/ceb000f0-e354-4138-967f-f4314b8c5d98/@@download/attachment/Epigenomics%20KAPA%20Hyper%20kit%20semi%20Manual%20Library%20Construction%20v2.4.pdf
general protocol:
https://www.encodeproject.org/documents/8fe184e1-e3f5-4acf-b7aa-188af5a3f3b4/@@download/attachment/Frozen%20Tissue%20for%20ChIP%20Module%201%20-%20Covaris%20Hammer%20Homogenization%20v%201.2.pdf
general protocol:
https://www.encodeproject.org/documents/75bad2f5-a924-40fe-9c48-ed322649bc31/@@download/attachment/Epigenomics%20Frozen%20Tissue%20for%20ChIP%20Protocol%20Using%20the%20Covaris%20Hammer%20v2.4.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina NextSeq 500
Description
https://www.encodeproject.org/experiments/ENCSR980YAL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR980YAL
assay title: Control ChIP-seq
assembly: mm10
encode release date: 2022-07-21
lab: Bradley Bernstein, Broad
library encode accession: ENCLB335FXC
size range: 200-600
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Apr 28, 2023
Last update date
May 02, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL19057
Series (1)
GSE231293
Control ChIP-seq from heart (ENCSR980YAL)
Relations
BioSample
SAMN34251874
SRA
SRX20151083
Supplementary file
Size
Download
File type/resource
GSM7256330_ENCLB335FXC_README.txt.gz
285 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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