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Sample GSM733650 Query DataSets for GSM733650
Status Public on Jun 02, 2011
Title Bernstein_NHDF-Ad_H3K4me3
Sample type SRA
 
Source name NHDF-Ad
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: adult dermal fibroblasts
cell karyotype: normal
cell lineage: mesoderm
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: 1)abcam; 2)Millipore
antibody vendorid: ab8580; 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001055
labversion: Illumina_GA2e and Illumina_GA2x
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Growth protocol NHDF-Ad_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Relations
Reanalyzed by GSE90454
SRA SRX067401
BioSample SAMN00622071
Named Annotation GSM733650_hg19_wgEncodeBroadHistoneNhdfadH3k4me3StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733650_hg19_wgEncodeBroadHistoneNhdfadH3k4me3StdAlnRep1.bam 994.7 Mb (ftp)(http) BAM
GSM733650_hg19_wgEncodeBroadHistoneNhdfadH3k4me3StdAlnRep2.bam 1.5 Gb (ftp)(http) BAM
GSM733650_hg19_wgEncodeBroadHistoneNhdfadH3k4me3StdPk.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM733650_hg19_wgEncodeBroadHistoneNhdfadH3k4me3StdSig.bigWig 712.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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