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Sample GSM733654 Query DataSets for GSM733654
Status Public on Jun 02, 2011
Title Bernstein_HMEC_H3K4me2
Sample type SRA
 
Source name HMEC
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: mammary epithelial cells
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me2
antibody targetdescription: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.
antibody vendorname: abcam
antibody vendorid: ab7766
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000093
labversion: Illumina_GA2e and Illumina_GA2x
replicate: 1,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Growth protocol HMEC_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Relations
Reanalyzed by GSM936084
SRA SRX067405
BioSample SAMN00622076
Named Annotation GSM733654_hg19_wgEncodeBroadHistoneHmecH3k4me2StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733654_hg19_wgEncodeBroadHistoneHmecH3k4me2StdAlnRep1.bam 834.5 Mb (ftp)(http) BAM
GSM733654_hg19_wgEncodeBroadHistoneHmecH3k4me2StdAlnRep2.bam 521.8 Mb (ftp)(http) BAM
GSM733654_hg19_wgEncodeBroadHistoneHmecH3k4me2StdPk.broadPeak.gz 1.5 Mb (ftp)(http) BROADPEAK
GSM733654_hg19_wgEncodeBroadHistoneHmecH3k4me2StdSig.bigWig 354.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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