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Sample GSM733720 Query DataSets for GSM733720
Status Public on Jun 02, 2011
Title Bernstein_NHEK_H3K4me3
Sample type SRA
 
Source name NHEK
Organism Homo sapiens
Characteristics donor_id: ENCDO268AAA,ENCDO303AAA
biomaterial_type: primary cell
cell_type: keratinocyte
lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: epidermal keratinocytes
cell sex: U
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: 1)abcam; 2)Millipore
antibody vendorid: ab8580; 07-473
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000072
replicate: 1,3,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Growth protocol Keratinocyte_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSM936087
SRA SRX067471
BioSample SAMN00622141
Named Annotation GSM733720_hg19_wgEncodeBroadHistoneNhekH3k4me3StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733720_hg19_wgEncodeBroadHistoneNhekH3k4me3StdAlnRep1.bam 614.4 Mb (ftp)(http) BAM
GSM733720_hg19_wgEncodeBroadHistoneNhekH3k4me3StdAlnRep2.bam 189.4 Mb (ftp)(http) BAM
GSM733720_hg19_wgEncodeBroadHistoneNhekH3k4me3StdAlnRep3.bam 153.8 Mb (ftp)(http) BAM
GSM733720_hg19_wgEncodeBroadHistoneNhekH3k4me3StdPk.broadPeak.gz 831.1 Kb (ftp)(http) BROADPEAK
GSM733720_hg19_wgEncodeBroadHistoneNhekH3k4me3StdSig.bigWig 331.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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