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Sample GSM73378

Query DataSets for GSM73378

Status

Public on Dec 01, 2005

Title

AML_t(9;11)_LIB5

Sample type

SAGE

Anchor

NlaIII

Tag Count

83102

Tag Length

Source name

bone marrow, CD15+ myeloid progenitor cells

Organism

Homo sapiens

Characteristics

Acute Myeoloid Leukemia (AML) patient sample with chromosomal translocation t(9;11). This library was constructed from a treatment-related AML cells with t(9;11).

Extracted molecule

total RNA

Description

SAGE analysis of gene expression in leukemic myeloid progenitor cells isolated from bone marrow

Submission date

Sep 06, 2005

Last update date

Nov 19, 2008

Contact name

San Ming Wang

E-mail(s)

swang1@northwestern.edu

Phone

224-364-7491

Fax

224-364-5003

Organization name

ENH Research Institute, Northwestern University

Department

Center for Functional Genomics

Street address

1001 University Place

City

Evanston

State/province

ZIP/Postal code

60062

Country

USA

Platform ID

GPL4

Series (1)

GSE3255

Gene Expression Profiles with Common Translocations in Acute Myeloid Leukemia (AML) using SAGE

Data table header descriptions
TAG	Ten-base SAGE tag
COUNT	Absolute tag count
TPM	tags per million

Data table
TAG	COUNT	TPM
CCCATCGTCC	1441	17340.14
CACCTAATTG	969	11660.37
GTGAAACCCC	958	11528.00
ATGTAAAAAA	728	8760.32
GGATTTGGCC	721	8676.08
CCTGTAATCC	647	7785.61
CCACTGCACT	593	7135.81
TTGGTCCTCT	590	7099.71
AAGACAGTGG	546	6570.24
GAGGGAGTTT	528	6353.64
TGCACGTTTT	441	5306.73
CTAAGACTTC	433	5210.46
ATTTGAGAAG	432	5198.43
AGGGCTTCCA	431	5186.40
TAGGTTGTCT	430	5174.36
ACTAACACCC	406	4885.56
GTGAAACCCT	396	4765.23
TCAGATCTTT	380	4572.69
GTGAAGGCAG	377	4536.59
CCCCAGCCAG	360	4332.03

Total number of rows: 23987

Table truncated, full table size 447 Kbytes.

Supplementary data files not provided