|
| Status |
Public on Nov 22, 2023 |
| Title |
016A |
| Sample type |
genomic |
| |
|
| Source name |
Blood
|
| Organism |
Homo sapiens |
| Characteristics |
population: Ghanaian
tissue: Blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted and used to undertake genotyping. Genomic DNA would be amplified using supplied PGx PCR primers in a final reaction volume of 5uL.
|
| Label |
n/a
|
| Label protocol |
n/a
|
| |
|
| Hybridization protocol |
n/a
|
| Scan protocol |
Plate is placed on the MassARRAY System.with Chip Prep Module or Mass ARRAY Nanodispenser and MAssARRAY analyzer
|
| Description |
DNA was extracted and used to undertake genotyping
|
| Data processing |
MassARRAY TyperAnalyzer is used to capture and process datasets.Post processing parameters are set and autolcuster used for cluster plots. PGx Reprot v3 is then generated after post processing using the software
Traffic Light pane with call rates of >/= 85% are good data calls and indcated as green
|
| |
|
| Submission date |
May 19, 2023 |
| Last update date |
Nov 22, 2023 |
| Contact name |
Nicholas Ekow Thomford |
| E-mail(s) |
nthomford@ucc.edu.gh
|
| Phone |
0244797595
|
| Organization name |
University of Cape Coast, Ghana
|
| Department |
Dept. of Med. Biochem.,SMS, CoHAS,
|
| Lab |
Pharmacogenomics and Genomic Medicine Lab
|
| Street address |
PMB, University of Cape Coast School of Medical Sciences, Coast Coast, Ghana
|
| City |
Cape Coast |
| State/province |
Central |
| ZIP/Postal code |
00000 |
| Country |
Ghana |
| |
|
| Platform ID |
GPL33422 |
| Series (1) |
| GSE232865 |
Exploratory pharmacogene variation in Ghanaian population |
|
