|
| Status |
Public on Sep 01, 2011 |
| Title |
human sperm donor 1 bs seq reads |
| Sample type |
SRA |
| |
|
| Source name |
Sperm
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Sperm
individual: donor 1
|
| Treatment protocol |
Bisulfite treated genomic DNA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Standard illumina genomic library
|
| |
|
| Library strategy |
Bisulfite-Seq |
| Library source |
genomic |
| Library selection |
RANDOM |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
Bisulfite converted
PE illumina adaptors were used, ligated libraires were amplified according the maunfacturers instruction.
200-400bp insert size
|
| Data processing |
human sequence mapped to hg18 and chimp to panTro2 (bed and wig files)
|
| |
|
| Submission date |
Jun 30, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Andrew D Smith |
| E-mail(s) |
andrewds@usc.edu
|
| Organization name |
University of Southern California
|
| Department |
Molecular and Computational Biology
|
| Lab |
Smith Lab
|
| Street address |
1050 Childs Way
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90089 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (1) |
| GSE30340 |
Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates |
|
| Relations |
| Reanalyzed by |
GSE46644 |
| SRA |
SRX081759 |
| SRA |
SRX081760 |
| BioSample |
SAMN00632013 |
