|
| Status |
Public on Mar 14, 2012 |
| Title |
CD4 WT RNA-Seq |
| Sample type |
SRA |
| |
|
| Source name |
WT CD4 cells
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
cell type: CD4+ T cell
genotype: Wildtype
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
PolyA RNAs were isolated and fragmented, then Ilumina compatible adaptors were ligated on.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Alignment: Sequence reads were obtained and mapped to the mouse genome (mm9 assembly) using the Illumina Illumina ELAND software.
|
| |
|
| Submission date |
Jul 12, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Mark Chong |
| E-mail(s) |
mchong@svi.edu.au
|
| Phone |
61-3-92313444
|
| Organization name |
St Vincent's Institute of Medical Research
|
| Street address |
9 Princes Street
|
| City |
Fitzroy |
| State/province |
Victoria |
| ZIP/Postal code |
3065 |
| Country |
Australia |
| |
|
| Platform ID |
GPL9250 |
| Series (2) |
| GSE30578 |
RNA mapping of Drosha deficient cells |
| GSE30584 |
RNA mapping of Drosha deficient cells, chromatin maps of mature T cells, and miRNA profiling of lymphopoiesis |
|
| Relations |
| Reanalyzed by |
GSE80797 |
| SRA |
SRX083243 |
| BioSample |
SAMN00668282 |
