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GEO accession:
Sample GSM768594
Query DataSets for GSM768594
Status
Public on Aug 15, 2011
Title
oral_severedysplasia_1028
Sample type
SAGE
Anchor
NlaIII
Tag Count
163249
Tag Length
10
Source name
oral biopsy, right lateral tongue
Organism
Homo sapiens
Characteristics
tissue: right lateral tongue
dysplasia: Severe
gender: female
age: 77
smoking status: never smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
994
6088.86
AAAAAAAAAG
12
73.51
AAAAAAAAAT
4
24.50
AAAAAAAACA
1
6.13
AAAAAAAAGA
9
55.13
AAAAAAAATA
2
12.25
AAAAAAAATC
1
6.13
AAAAAAAATG
2
12.25
AAAAAAAATT
2
12.25
AAAAAAACAA
2
12.25
AAAAAAACTC
1
6.13
AAAAAAAGAA
4
24.50
AAAAAAAGCA
1
6.13
AAAAAAAGCT
1
6.13
AAAAAAAGGG
2
12.25
AAAAAAATAA
5
30.63
AAAAAAATAG
1
6.13
AAAAAAATCA
6
36.75
AAAAAAATGA
1
6.13
AAAAAAATGC
1
6.13
Total number of rows:
36908
Table truncated, full table size
664 Kbytes
.
Supplementary data files not provided
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