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GEO accession:
Sample GSM768603
Query DataSets for GSM768603
Status
Public on Aug 15, 2011
Title
oral_severedysplasia_1404
Sample type
SAGE
Anchor
NlaIII
Tag Count
190317
Tag Length
10
Source name
oral biopsy, right ventral tongue
Organism
Homo sapiens
Characteristics
tissue: right ventral tongue
dysplasia: severe
gender: male
age: 76
smoking status: former smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
1011
5312.19
AAAAAAAAAC
6
31.53
AAAAAAAAAG
10
52.54
AAAAAAAAAT
4
21.02
AAAAAAAACA
1
5.25
AAAAAAAACC
1
5.25
AAAAAAAAGA
7
36.78
AAAAAAAAGG
2
10.51
AAAAAAAATA
4
21.02
AAAAAAAATG
1
5.25
AAAAAAAATT
1
5.25
AAAAAAACAA
1
5.25
AAAAAAACCC
3
15.76
AAAAAAAGAA
6
31.53
AAAAAAAGCA
1
5.25
AAAAAAAGTA
1
5.25
AAAAAAATAA
1
5.25
AAAAAAATAG
1
5.25
AAAAAAATCA
5
26.27
AAAAAAATGT
1
5.25
Total number of rows:
39112
Table truncated, full table size
704 Kbytes
.
Supplementary data files not provided
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