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GEO accession:
Sample GSM768609
Query DataSets for GSM768609
Status
Public on Aug 15, 2011
Title
oral_severedysplasia_1444
Sample type
SAGE
Anchor
NlaIII
Tag Count
121966
Tag Length
10
Source name
oral biopsy, right posterior trigone
Organism
Homo sapiens
Characteristics
tissue: right posterior trigone
dysplasia: severe / CIS
gender: female
age: 75
smoking status: never smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
619
5075.18
AAAAAAAAAC
1
8.20
AAAAAAAAAG
5
41.00
AAAAAAAAAT
2
16.40
AAAAAAAACA
3
24.60
AAAAAAAACC
2
16.40
AAAAAAAAGA
7
57.39
AAAAAAAAGC
1
8.20
AAAAAAAAGG
7
57.39
AAAAAAAATG
1
8.20
AAAAAAAATT
1
8.20
AAAAAAACAA
2
16.40
AAAAAAACCA
2
16.40
AAAAAAACCC
17
139.38
AAAAAAACTT
1
8.20
AAAAAAAGAA
2
16.40
AAAAAAAGAG
2
16.40
AAAAAAAGCA
1
8.20
AAAAAAAGCT
2
16.40
AAAAAAAGTG
1
8.20
Total number of rows:
53107
Table truncated, full table size
945 Kbytes
.
Supplementary data files not provided
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