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GEO accession:
Sample GSM768643
Query DataSets for GSM768643
Status
Public on Aug 15, 2011
Title
oral_severedysplasia_1599
Sample type
SAGE
Anchor
NlaIII
Tag Count
160717
Tag Length
10
Source name
oral biopsy, left ventral tongue
Organism
Homo sapiens
Characteristics
tissue: left ventral tongue
dysplasia: severe
gender: female
age: 45
smoking status: never smoker
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by guanidium isothiocyanate and phenol/chloroform extraction.
Data processing
Raw SAGE tags, excluding linker and ditags.
Submission date
Jul 28, 2011
Last update date
Aug 15, 2011
Contact name
Ewan Gibb
E-mail(s)
egibb@bccrc.ca
Organization name
BC Cancer Agency Research Centre
Street address
675 West 10th Ave
City
Vancouver
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE31021
Profiling long non-coding RNA expression in oral premalignant lesions.
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
406
2526.18
AAAAAAAAAC
3
18.67
AAAAAAAAAG
3
18.67
AAAAAAAAAT
2
12.44
AAAAAAAACA
1
6.22
AAAAAAAACT
1
6.22
AAAAAAAAGA
13
80.89
AAAAAAAAGG
1
6.22
AAAAAAAATA
1
6.22
AAAAAAAATG
2
12.44
AAAAAAACAA
1
6.22
AAAAAAACAG
1
6.22
AAAAAAACCC
5
31.11
AAAAAAACTA
1
6.22
AAAAAAACTC
1
6.22
AAAAAAACTG
1
6.22
AAAAAAAGAA
2
12.44
AAAAAAAGCA
1
6.22
AAAAAAAGCT
1
6.22
AAAAAAAGGG
1
6.22
Total number of rows:
37497
Table truncated, full table size
674 Kbytes
.
Supplementary data files not provided
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