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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 01, 2024 |
| Title |
K-562 cell line, RCB1897 |
| Sample type |
genomic |
| |
|
| Source name |
RCB1897
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: CML
|
| Treatment protocol |
None
|
| Growth protocol |
Cell lines were grown according to standard conditions.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using the AllPrep DNA/RNA Mini Kit (Qiagen 80204).
|
| Label |
biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
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| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
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| Data processing |
The data analyses can be carried out using the Chromosome Analysis Suite software, ChAS 4.2 (Thermo Fisher Scientific).
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| Submission date |
Sep 21, 2023 |
| Last update date |
Jan 01, 2024 |
| Contact name |
Fumio Kasai |
| E-mail(s) |
fumio.kasai@riken.jp
|
| Organization name |
RIKEN
|
| Street address |
Koyadai 3-1-1
|
| City |
Tsukuba |
| ZIP/Postal code |
3050074 |
| Country |
Japan |
| |
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| Platform ID |
GPL16131 |
| Series (1) |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
LOG2 RATIO |
| WEIGHTED LOG2 RATIO |
|
| SMOOTH SIGNAL |
|
| Data table |
| ID_REF |
VALUE |
WEIGHTED LOG2 RATIO |
SMOOTH SIGNAL |
| C-7SARK |
-0.421634 |
0.082649 |
2.327512 |
| C-4WYLN |
0.336046 |
0.228404 |
2.326607 |
| C-3BFNY |
0.304311 |
0.067786 |
2.325149 |
| C-7ONNE |
0.372433 |
0.212330 |
2.324635 |
| C-6HYCN |
0.220084 |
0.237785 |
2.324678 |
| C-7SCGC |
0.281877 |
0.379955 |
2.325356 |
| C-7RZQQ |
0.316955 |
0.190238 |
2.325157 |
| C-7RZWZ |
0.318021 |
0.328958 |
2.325722 |
| C-7SEBI |
0.132526 |
-0.047500 |
2.325600 |
| C-7RZIL |
0.017709 |
0.086805 |
2.327676 |
| C-4NQTX |
-0.170366 |
-0.144631 |
2.329627 |
| C-7SDKW |
-0.100766 |
-0.015573 |
2.329221 |
| S-3WRNV |
nan |
nan |
nan |
| C-7RXVK |
0.238277 |
0.013624 |
2.330482 |
| C-4LHKS |
0.402201 |
0.136730 |
2.331678 |
| C-7RWHE |
-0.670895 |
-0.127204 |
2.333115 |
| C-7SBEJ |
0.042911 |
-0.010640 |
2.334749 |
| C-7RYJO |
0.142625 |
-0.152864 |
2.335751 |
| C-7SEGS |
-0.205308 |
-0.043343 |
2.337442 |
| C-4LLXK |
-0.420694 |
-0.317195 |
2.340279 |
Total number of rows: 2749693
Table truncated, full table size 95804 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM7795622_RCB1897_K562.CEL.gz |
32.2 Mb |
(ftp)(http) |
CEL |
| GSM7795622_RCB1897_K562.cychp.gz |
96.5 Mb |
(ftp)(http) |
CYCHP |
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