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Sample GSM7800 Query DataSets for GSM7800
Status Public on Jul 10, 2003
Title SAGE_Hiroshima_GC_S219T
Sample type SAGE
Anchor NlaIII
Tag Count 34660
Tag Length 10
 
Source name primary gastric cancer tissue
Organism Homo sapiens
Extracted molecule total RNA
 
Description Tissue Description: 27 yrs female. Primary gastric adenocarcinoma, T3N3M0, stage IV (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), poorly differentiated (scirrhous type), obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: female
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2441
Keywords = stomach, scirrhous gastric cancer, young female, non-normalized, SAGE library method, bulk
 
Submission date Jul 10, 2003
Last update date May 28, 2005
Contact name Wataru Yasui
E-mail(s) wyasui@hiroshima-u.ac.jp
Phone +81-82-257-5145
Fax +81-82-257-5149
Organization name Hiroshima University Graduate School of Biomedical Sciences
Department Molecular Pathology
Street address
City Hiroshima
ZIP/Postal code 734-8551
Country Japan
 
Platform ID GPL4
Series (1)
GSE545 SAGE Hiroshima gastric cancer tissue

Data table header descriptions
TAG Ten base SAGE tag
COUNT Absolute tag count
TPM Tags per million

Data table
TAG COUNT TPM
CCCATCGTCC 655 18897.86497
AAAACATTCT 557 16070.39815
CTAAGACTTC 396 11425.27409
TCCCTATTAA 322 9290.248125
CCCGTCCGGA 304 8770.917484
TTCATACACC 217 6260.819388
GTGAAACCCC 202 5828.043855
CCTGTAATCC 192 5539.526832
CTCATAAGGA 191 5510.67513
CACCTAATTG 175 5049.047894
GGGCTGGGGT 175 5049.047894
CCACTGCACT 167 4818.234276
ACTAACACCC 159 4587.420658
CGCCGCCGGC 157 4529.717253
CAAGCATCCC 144 4154.645124
TCCCCGTACA 141 4068.090017
GCGACCGTCA 131 3779.572995
TGATTTCACT 127 3664.166186
GTTGTGGTTA 121 3491.055972
GGGGCAGGGC 118 3404.500866

Total number of rows: 14576

Table truncated, full table size 354 Kbytes.




Supplementary data files not provided

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