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GEO accession:
Sample GSM830520
Query DataSets for GSM830520
Status
Public on Nov 10, 2011
Title
GIS_RnaPet_prostate_cell_longPolyA
Sample type
SRA
Source name
prostate
Organism
Homo sapiens
Characteristics
datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0160WC
labexpid: DHP001
labversion: clone-based
readtype: 2x36
readtype description: Paired 36 nt reads
localization: cell
localization description: Whole cell
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0160WC
labexpid: DHP001
labversion: clone-based
replicate: 1
replicate description: tier 1
Biomaterial provider
ATCC
Extracted molecule
polyA RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Submission date
Nov 09, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE33600
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA
SRX105223
BioSample
SAMN00752443
Named Annotation
GSM830520_hg19_wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1.bigWig
Named Annotation
GSM830520_hg19_wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1.bigWig
Supplementary file
Size
Download
File type/resource
GSM830520_hg19_wgEncodeGisRnaPetProstateCellPapClustersRep1.bed.gz
1001.2 Kb
(ftp)
(http)
BED
GSM830520_hg19_wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1.bigWig
14.3 Mb
(ftp)
(http)
BIGWIG
GSM830520_hg19_wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1.bigWig
14.3 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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