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GEO accession:
Sample GSM830521
Query DataSets for GSM830521
Status
Public on Nov 10, 2011
Title
GIS_RnaPet_K562_nucleolus_total
Sample type
SRA
Source name
K562
Organism
Homo sapiens
Characteristics
datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0145NL
labexpid: DHK008
labversion: clone-based
readtype: 2x36
readtype description: Paired 36 nt reads
cell sex: F
localization: nucleolus
localization description: The part of the nucleus where ribosomal RNA is actively transcribed
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0145NL
labexpid: DHK008
labversion: clone-based
replicate: 1
replicate description: tier 1
Biomaterial provider
ATCC
Growth protocol
K562_protocol.pdf
Extracted molecule
nuclear RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Submission date
Nov 09, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE33600
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA
SRX105224
BioSample
SAMN00752444
Named Annotation
GSM830521_hg19_wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1.bigWig
Named Annotation
GSM830521_hg19_wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1.bigWig
Supplementary file
Size
Download
File type/resource
GSM830521_hg19_wgEncodeGisRnaPetK562NucleolusTotalClustersRep1.bed.gz
696.1 Kb
(ftp)
(http)
BED
GSM830521_hg19_wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1.bigWig
16.1 Mb
(ftp)
(http)
BIGWIG
GSM830521_hg19_wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1.bigWig
16.1 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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