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Sample GSM830524 Query DataSets for GSM830524
Status Public on Nov 10, 2011
Title GIS_RnaPet_K562_nucleoplasm_total
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0148NP
labexpid: PHK002
labversion: clone-based
readtype: 2x36
readtype description: Paired 36 nt reads
cell sex: F
localization: nucleoplasm
localization description: That part of the nuclear content other than the chromosomes or the nucleolus
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0148NP
labexpid: PHK002
labversion: clone-based
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Growth protocol K562_protocol.pdf
Extracted molecule nuclear RNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
 
Submission date Nov 09, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE33600 RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA SRX105220
BioSample SAMN00752447
Named Annotation GSM830524_hg19_wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1.bigWig
Named Annotation GSM830524_hg19_wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM830524_hg19_wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1.bed.gz 23.8 Kb (ftp)(http) BED
GSM830524_hg19_wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1.bigWig 661.7 Kb (ftp)(http) BIGWIG
GSM830524_hg19_wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1.bigWig 669.7 Kb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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