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Sample GSM830530 Query DataSets for GSM830530
Status Public on Nov 10, 2011
Title GIS_RnaPet_HeLa-S3_cell_longPolyA
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 011WC
labexpid: RHH014
labversion: clone-free
readtype: 2x36
readtype description: Paired 36 nt reads
cell sex: F
localization: cell
localization description: Whole cell
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 011WC
labexpid: RHH014
labversion: clone-free
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
 
Submission date Nov 09, 2011
Last update date Aug 26, 2014
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE33600 RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
BioSample SAMN00752453
Named Annotation GSM830530_hg19_wgEncodeGisRnaPetHelas3CellPapMinusRawRep1.bigWig
Named Annotation GSM830530_hg19_wgEncodeGisRnaPetHelas3CellPapPlusRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM830530_hg19_wgEncodeGisRnaPetHelas3CellPapClustersRep1.bed.gz 4.5 Mb (ftp)(http) BED
GSM830530_hg19_wgEncodeGisRnaPetHelas3CellPapMinusRawRep1.bigWig 15.1 Mb (ftp)(http) BIGWIG
GSM830530_hg19_wgEncodeGisRnaPetHelas3CellPapPlusRawRep1.bigWig 15.0 Mb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

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