GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM830531
Query DataSets for GSM830531
Status
Public on Nov 10, 2011
Title
GIS_RnaPet_HepG2_nucleus_longPolyA
Sample type
SRA
Source name
HepG2
Organism
Homo sapiens
Characteristics
datatype: RnaPet
datatype description: RNA Paired-End Tags
cell description: hepatocellular carcinoma
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0129N
labexpid: DHH003
labversion: clone-based
readtype: 2x36
readtype description: Paired 36 nt reads
localization: nucleus
localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0129N
labexpid: DHH003
labversion: clone-based
replicate: 1
replicate description: tier 1
Biomaterial provider
ATCC
Growth protocol
HepG2_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Submission date
Nov 09, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE33600
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA
SRX105233
BioSample
SAMN00752454
Named Annotation
GSM830531_hg19_wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1.bigWig
Named Annotation
GSM830531_hg19_wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1.bigWig
Supplementary file
Size
Download
File type/resource
GSM830531_hg19_wgEncodeGisRnaPetHepg2NucleusPapClustersRep1.bed.gz
2.1 Mb
(ftp)
(http)
BED
GSM830531_hg19_wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1.bigWig
51.5 Mb
(ftp)
(http)
BIGWIG
GSM830531_hg19_wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1.bigWig
51.8 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
