|
Status |
Public on Nov 10, 2011 |
Title |
GIS_RnaPet_GM12878_nucleus_longPolyA |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
datatype: RnaPet datatype description: RNA Paired-End Tags cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: gen0111N labexpid: DHG002 labversion: clone-based readtype: 2x36 readtype description: Paired 36 nt reads localization: nucleus localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: gen0111N labexpid: DHG002 labversion: clone-based replicate: 1 replicate description: tier 1
|
Biomaterial provider |
Coriell
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
polyA RNA |
Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
|
|
|
Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
|
|
|
Submission date |
Nov 09, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9115 |
Series (1) |
GSE33600 |
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS |
|
Relations |
SRA |
SRX105236 |
BioSample |
SAMN00752457 |
Named Annotation |
GSM830534_hg19_wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1.bigWig |
Named Annotation |
GSM830534_hg19_wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1.bigWig |