GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM830537
Query DataSets for GSM830537
Status
Public on Nov 10, 2011
Title
GIS_RnaPet_K562_cytosol_longPolyA
Sample type
SRA
Source name
K562
Organism
Homo sapiens
Characteristics
datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0138C
labexpid: IHK009010015
labversion: clone-free
readtype: 2x36
readtype description: Paired 36 nt reads
cell sex: F
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0138C
labexpid: IHK009010015
labversion: clone-free
replicate: 1
replicate description: tier 1
Biomaterial provider
ATCC
Growth protocol
K562_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer IIx
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Submission date
Nov 09, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL10999
Series (1)
GSE33600
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA
SRX105238
BioSample
SAMN00752460
Named Annotation
GSM830537_hg19_wgEncodeGisRnaPetK562CytosolPapMinusRawRep1.bigWig
Named Annotation
GSM830537_hg19_wgEncodeGisRnaPetK562CytosolPapPlusRawRep1.bigWig
Supplementary file
Size
Download
File type/resource
GSM830537_hg19_wgEncodeGisRnaPetK562CytosolPapClustersRep1.bed.gz
5.2 Mb
(ftp)
(http)
BED
GSM830537_hg19_wgEncodeGisRnaPetK562CytosolPapMinusRawRep1.bigWig
14.2 Mb
(ftp)
(http)
BIGWIG
GSM830537_hg19_wgEncodeGisRnaPetK562CytosolPapPlusRawRep1.bigWig
14.2 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
