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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 29, 2011 |
| Title |
Runx2 ChIP-seq |
| Sample type |
SRA |
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| Source name |
C4-2B
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| Organism |
Homo sapiens |
| Characteristics |
chip antibody: Runx2 Flag tagged
cell line: C4-2B
chip antibody manufacturer: Sigma
chip antibody catalog #: F-3165
chip antibody lot #: 050M6000
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Libraries for ChIP-seq were prepared following protocols recommended by Illumina.
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
PEAKS: FindPeaks algorithm version 4.0 (http://sourceforge.net/apps/mediawiki/vancouvershortr/index.php?title=FindPeaks)
hg18
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| Submission date |
Nov 22, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Houtan Noushmehr |
| Phone |
310-570-2362
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| Organization name |
Henry Ford Health System
|
| Street address |
2799 W. Grand Blvd
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| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48202 |
| Country |
USA |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE33889 |
Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion. |
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| Relations |
| SRA |
SRX107411 |
| BioSample |
SAMN00760500 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM838400_Runx2_peaks.txt.gz |
18.5 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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