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GEO accession:
Sample GSM840136
Query DataSets for GSM840136
Status
Public on Nov 29, 2011
Title
CSHL_RnaSeq_K562_cell_total
Sample type
SRA
Source name
K562
Organism
Homo sapiens
Characteristics
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0131WC,gen0132WC
labexpid: crg-45,crg-53
replicate: 1,2
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
localization: cell
localization description: Whole cell
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0131WC
labexpid: crg-45
replicate: 1
replicate description: tier 1
Biomaterial provider
ATCC
Growth protocol
K562_protocol.pdf
Extracted molecule
total RNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
Submission date
Nov 29, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (2)
GSE26284
ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE30567
ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)
Relations
SRA
SRX110317
BioSample
SAMN00761802
Named Annotation
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalMinusRawSigRep1.bigWig
Named Annotation
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalMinusRawSigRep2.bigWig
Named Annotation
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalPlusRawSigRep1.bigWig
Named Annotation
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalPlusRawSigRep2.bigWig
Supplementary file
Size
Download
File type/resource
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalMinusRawSigRep1.bigWig
265.2 Mb
(ftp)
(http)
BIGWIG
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalMinusRawSigRep2.bigWig
216.2 Mb
(ftp)
(http)
BIGWIG
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalPlusRawSigRep1.bigWig
269.9 Mb
(ftp)
(http)
BIGWIG
GSM840136_hg19_wgEncodeCshlLongRnaSeqK562CellTotalPlusRawSigRep2.bigWig
220.3 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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