|
| Status |
Public on Nov 29, 2011 |
| Title |
CSHL_RnaSeq_GM12878_cell_total |
| Sample type |
SRA |
| |
|
| Source name |
GM12878
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0102WC,gen0103WC
labexpid: crg-12,crg-7
replicate: 1,2
cell lineage: mesoderm
cell sex: F
localization: cell
localization description: Whole cell
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0102WC
labexpid: crg-7
replicate: 1
replicate description: tier 1
|
| Biomaterial provider |
Coriell
|
| Growth protocol |
GM12878_protocol.pdf
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
|
| |
|
| Submission date |
Nov 29, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (2) |
| GSE26284 |
ENCODE Cold Spring Harbor Labs Long RNA-seq |
| GSE30567 |
ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19) |
|
| Relations |
| SRA |
SRX110319 |
| BioSample |
SAMN00761804 |
| Named Annotation |
GSM840138_hg19_wgEncodeCshlLongRnaSeqGm12878CellTotalMinusRawSigRep1.bigWig |
| Named Annotation |
GSM840138_hg19_wgEncodeCshlLongRnaSeqGm12878CellTotalMinusRawSigRep2.bigWig |
| Named Annotation |
GSM840138_hg19_wgEncodeCshlLongRnaSeqGm12878CellTotalPlusRawSigRep1.bigWig |
| Named Annotation |
GSM840138_hg19_wgEncodeCshlLongRnaSeqGm12878CellTotalPlusRawSigRep2.bigWig |
