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Sample GSM849326 Query DataSets for GSM849326
Status Public on Dec 16, 2011
Title RIKEN_Cage_H1-hESC_nucleus_longPolyA
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 006N
labexpid: J95
readtype: 1x36
readtype description: Single 36 nt reads
cell lineage: inner cell mass
cell sex: M
localization: nucleus
localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 006N
labexpid: J95
replicate: 2
replicate description: tier 2
Biomaterial provider WiCell Research Institute
Growth protocol missing
Extracted molecule polyA RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection CAGE
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Submission date Dec 14, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE34448 RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA SRX111924
BioSample SAMN00766236
Named Annotation GSM849326_hg19_wgEncodeRikenCageH1hescNucleusPapMinusSignalRep2.bigWig
Named Annotation GSM849326_hg19_wgEncodeRikenCageH1hescNucleusPapPlusSignalRep2.bigWig

Supplementary file Size Download File type/resource
GSM849326_hg19_wgEncodeRikenCageH1hescNucleusPapClusters.bed.gz 22.1 Mb (ftp)(http) BED
GSM849326_hg19_wgEncodeRikenCageH1hescNucleusPapMinusSignalRep2.bigWig 12.3 Mb (ftp)(http) BIGWIG
GSM849326_hg19_wgEncodeRikenCageH1hescNucleusPapPlusSignalRep2.bigWig 12.7 Mb (ftp)(http) BIGWIG
GSM849326_hg19_wgEncodeRikenCageH1hescNucleusPapTssHmm.bedRnaElements.gz 1.5 Mb (ftp)(http) BEDRNAELEMENTS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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