|
| Status |
Public on Dec 16, 2011 |
| Title |
RIKEN_Cage_K562_nucleolus_total |
| Sample type |
SRA |
| |
|
| Source name |
K562
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: Cage
datatype description: CAGE 5' RNA Tags
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0144NL
labexpid: I33
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
localization: nucleolus
localization description: The part of the nucleus where ribosomal RNA is actively transcribed
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0144NL
labexpid: I33
|
| Biomaterial provider |
ATCC
|
| Growth protocol |
K562_protocol.pdf
|
| Extracted molecule |
nuclear RNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
CAGE |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
| |
|
| Submission date |
Dec 14, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
| Relations |
| SRA |
SRX111930 |
| BioSample |
SAMN00766242 |
| Named Annotation |
GSM849332_hg19_wgEncodeRikenCageK562NucleolusTotalMinusSignal.bigWig |
| Named Annotation |
GSM849332_hg19_wgEncodeRikenCageK562NucleolusTotalPlusSignal.bigWig |
