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Sample GSM849344 Query DataSets for GSM849344
Status Public on Dec 16, 2011
Title RIKEN_Cage_HepG2_nucleolus_total
Sample type SRA
 
Source name HepG2
Organism Homo sapiens
Characteristics datatype: Cage
datatype description: CAGE 5' RNA Tags
cell description: hepatocellular carcinoma
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0127NL
labexpid: I68
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
localization: nucleolus
localization description: The part of the nucleus where ribosomal RNA is actively transcribed
rnaextract: total
rnaextract description: Total RNA extract (longer than 200 nt)
biorep: gen0127NL
labexpid: I68
Biomaterial provider ATCC
Growth protocol HepG2_protocol.pdf
Extracted molecule nuclear RNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection CAGE
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
 
Submission date Dec 14, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE34448 RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA SRX111942
BioSample SAMN00766254
Named Annotation GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalMinusSignal.bigWig
Named Annotation GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalPlusSignal.bigWig

Supplementary file Size Download File type/resource
GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalClusters.bed.gz 35.8 Mb (ftp)(http) BED
GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalMinusSignal.bigWig 19.5 Mb (ftp)(http) BIGWIG
GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalPlusSignal.bigWig 19.7 Mb (ftp)(http) BIGWIG
GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalTssGencV7.gtf.gz 2.7 Mb (ftp)(http) GTF
GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalTssHmmV2.bedRnaElements.gz 10.9 Mb (ftp)(http) BEDRNAELEMENTS
GSM849344_hg19_wgEncodeRikenCageHepg2NucleolusTotalTssHmmV3.bedRnaElements.gz 10.9 Mb (ftp)(http) BEDRNAELEMENTS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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