|
Status |
Public on Dec 16, 2011 |
Title |
RIKEN_Cage_HepG2_nucleus_longNonPolyA |
Sample type |
SRA |
|
|
Source name |
HepG2
|
Organism |
Homo sapiens |
Characteristics |
datatype: Cage datatype description: CAGE 5' RNA Tags cell description: hepatocellular carcinoma rnaextract: longNonPolyA rnaextract description: Poly(A)- RNA longer than 200 nt biorep: gen0128N labexpid: I44 labversion: bedtools v2.7.1 cell lineage: endoderm cell sex: M localization: nucleus localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA rnaextract: longNonPolyA rnaextract description: Poly(A)- RNA longer than 200 nt biorep: gen0128N labexpid: I44 labversion: Delve version 0.9
|
Biomaterial provider |
ATCC
|
Growth protocol |
HepG2_protocol.pdf
|
Extracted molecule |
nuclear RNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
CAGE |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Submission date |
Dec 14, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (1) |
GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
Relations |
SRA |
SRX111943 |
BioSample |
SAMN00766255 |
Named Annotation |
GSM849345_hg19_wgEncodeRikenCageHepg2NucleusPamMinusSignal.bigWig |
Named Annotation |
GSM849345_hg19_wgEncodeRikenCageHepg2NucleusPamPlusSignal.bigWig |