|
Status |
Public on Dec 16, 2011 |
Title |
RIKEN_Cage_GM12878_nucleus_longPolyA |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
datatype: Cage datatype description: CAGE 5' RNA Tags cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 003N,004N,003N,004N labexpid: J93,J94,J94,J93 labversion: IDR replicate: 1,2 cell sex: F localization: nucleus localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 003N labexpid: J93 replicate: 1 replicate description: tier 1
|
Biomaterial provider |
Coriell
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
CAGE |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
|
|
|
Submission date |
Dec 14, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL10999 |
Series (1) |
GSE34448 |
RNA Subcellular CAGE Localization from ENCODE/RIKEN |
|
Relations |
SRA |
SRX111946 |
BioSample |
SAMN00766258 |
Named Annotation |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapMinusSignalRep1.bigWig |
Named Annotation |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapMinusSignalRep2.bigWig |
Named Annotation |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapPlusSignalRep1.bigWig |
Named Annotation |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapPlusSignalRep2.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapClusters.bed.gz |
35.7 Mb |
(ftp)(http) |
BED |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapMinusSignalRep1.bigWig |
16.1 Mb |
(ftp)(http) |
BIGWIG |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapMinusSignalRep2.bigWig |
17.9 Mb |
(ftp)(http) |
BIGWIG |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapPlusSignalRep1.bigWig |
17.7 Mb |
(ftp)(http) |
BIGWIG |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapPlusSignalRep2.bigWig |
19.7 Mb |
(ftp)(http) |
BIGWIG |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapTssGencV7.gtf.gz |
3.1 Mb |
(ftp)(http) |
GTF |
GSM849348_hg19_wgEncodeRikenCageGm12878NucleusPapTssHmm.bedRnaElements.gz |
6.8 Mb |
(ftp)(http) |
BEDRNAELEMENTS |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |