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GEO accession:
Sample GSM849351
Query DataSets for GSM849351
Status
Public on Dec 16, 2011
Title
RIKEN_Cage_HepG2_cytosol_longNonPolyA
Sample type
SRA
Source name
HepG2
Organism
Homo sapiens
Characteristics
datatype: Cage
datatype description: CAGE 5' RNA Tags
cell description: hepatocellular carcinoma
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: gen0125C
labexpid: I42
labversion: bedtools v2.7.1
cell lineage: endoderm
cell sex: M
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: gen0125C
labexpid: I42
labversion: Delve version 0.9
Biomaterial provider
ATCC
Growth protocol
HepG2_protocol.pdf
Extracted molecule
cytoplasmic RNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
CAGE
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeRikenCage
Submission date
Dec 14, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE34448
RNA Subcellular CAGE Localization from ENCODE/RIKEN
Relations
SRA
SRX111949
BioSample
SAMN00766261
Named Annotation
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamMinusSignal.bigWig
Named Annotation
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamPlusSignal.bigWig
Supplementary file
Size
Download
File type/resource
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamClusters.bed.gz
10.8 Mb
(ftp)
(http)
BED
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamMinusSignal.bigWig
8.2 Mb
(ftp)
(http)
BIGWIG
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamPlusSignal.bigWig
11.4 Mb
(ftp)
(http)
BIGWIG
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamTssGencV7.gtf.gz
2.7 Mb
(ftp)
(http)
GTF
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamTssHmm.bedRnaElements.gz
5.0 Mb
(ftp)
(http)
BEDRNAELEMENTS
GSM849351_hg19_wgEncodeRikenCageHepg2CytosolPamTssHmmV2.bedRnaElements.gz
5.0 Mb
(ftp)
(http)
BEDRNAELEMENTS
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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